Functional Analysis: Difference between revisions

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Laskowski R A, Watson J D, Thornton J M (2005). ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Res., 33, W89-W93. [http://nar.oxfordjournals.org/cgi/reprint/33/suppl_2/W89?ijkey=0EJWHewQp1zaEeJ&keytype=ref]
Laskowski R A, Watson J D, Thornton J M (2005). ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Res., 33, W89-W93. [http://nar.oxfordjournals.org/cgi/reprint/33/suppl_2/W89?ijkey=0EJWHewQp1zaEeJ&keytype=ref]


== Using mouse sequence: ==
== Results: ==
Locate http://locate.imb.uq.edu.au
LOCATE is a curated database that houses data describing the membrane organization and subcellular localization of proteins from the RIKEN FANTOM3 mouse protein sequence set. The membrane organization is predicted by the high-throughput, computational pipeline MemO. The subcellular locations were determined by a high-throughput, immunofluorescence-based assay and by manually reviewing peer-reviewed publications.


[[Locate Analysis]]
[[Image:2gnx locate.GIF]]


Mammalian Orthology http://www.informatics.jax.org/searches/homology_report.cgi?_Marker_key=92352 -- Genes


Mammalian Orthology http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=homologene&dopt=HomoloGene&list_uids=17580 --Proteins
[[2gnx BlastP]]
 
STRING: a database of predicted functional associations between proteins. String returned no results.


String returned no results.
CDART http://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi?cmd=rps - when given a protein query sequence, CDART displays the functional domains that make up the protein and lists proteins with similar domain architectures.
Returns no results for mouse sequence.


Pfam didn't work...http://www.sanger.ac.uk/cgi-bin/Pfam/getblast?id=2103981H86007039eB664
Pfam didn't work...http://www.sanger.ac.uk/cgi-bin/Pfam/getblast?id=2103981H86007039eB664 - protein families


Profunc http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/profunc/GetResults.pl?source=profunc&user_id=ay41&code=073806
Profunc http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/profunc/GetResults.pl?source=profunc&user_id=ay41&code=073806


Interpro returned no results.
Interpro returned no results - protein domain prediction.
 
Mammalian Orthology http://www.informatics.jax.org/searches/homology_report.cgi?_Marker_key=92352 -- Genes


CDART http://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi?cmd=rps - when given a protein query sequence, CDART displays the functional domains that make up the protein and lists proteins with similar domain architectures.
Mammalian Orthology http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=homologene&dopt=HomoloGene&list_uids=17580 --Proteins
Returns no results for mouse sequence.


== GEGG biochemical pathways ==
== GEGG biochemical pathways ==
Line 49: Line 54:
Symatlas is a database full of microarray data for genes in different tissues. It has the function to find correlated microarray data which brings up genes with similar expression data.
Symatlas is a database full of microarray data for genes in different tissues. It has the function to find correlated microarray data which brings up genes with similar expression data.


The results
The results of a correlation search give a fair few corresponding genes with similar microarray expressions, however the presence of several olfactory receptors seemed interesting : Olfr435, Olfr57, Olfr829, Olfr30.
 
As the structural team have found a GAF domain on the C-terminal, i tried to find a link between olfactory receptors and the GAF domain.
[http://myprofile.cos.com/jbeavo - related to cGMP and PDEs??? ]
 
[http://www.nature.com/emboj/journal/v19/n20/full/7593343a.html Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor]
 
== cis-regulatory elements ==
Cis Red - The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, similarity, clustering, co-occurrence and coexpression calculations.
[http://www.cisred.org/mouse3/gene_view?ensembl_id=ENSMUSG00000053684 regulatory elements in BC048403]
 
=== Annotation-based Co-occurring Motif Pattern ===
 
[http://www.cisred.org/mouse3/mouse3/pattern?pattern_id=295&m=399392&pattern_name=295%20(POU2F1__Pax-6)&g=&c=pou2f1-pax6]
[http://www.cisred.org/mouse3/pattern?pattern_id=14&c=200999&pattern_name=AIRE__FOXJ2&g=&m=  aire-foxj2]
 
[http://www.cisred.org/mouse3/mouse3/pattern?pattern_id=598&m=30173&pattern_name=598%20(Pax-6__Pax-6)&g=&c=  pax6-pax6]
 
[http://www.cisred.org/mouse3/mouse3/pattern?pattern_id=1084&m=414244&pattern_name=1084%20(POU1F1__Pax-6)&g=&c=  pou1f1-pax6]
 
[http://www.cisred.org/mouse3/mouse3/pattern?pattern_id=1574&m=181562&pattern_name=1574%20(IPF1__POU1F1)&g=&c=  ipf1-pou1f1]
 
The following table portrays the entire 120 olfactory receptors corresponding to the 14 modules listed accross the top. This table has been cut down to olfactory receptors that have 3 or more co-occuring modules, and is presented in the report.
 
 
{|border="1"
|
|cdx-2_IPF1
|AFP1_POU2F1
|AIRE_FOXJ2
|cdx-2_foxj2
|ipf1_pou2f1
|pou1f1_pax-6
|pou2f1_pax-6
|aire_ipf1
|ipf1_pax-6
|afp1_pou1f1
|afp1_pax-6
|afpa_ipf1
|pax-6_pax-6
|ipf1_pou1f1
|count
|----
|olfactory receptor 39 [Source:MarkerSymbol;Acc:MGI:1313142]
|
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 43 [Source:MarkerSymbol;Acc:MGI:1333770]
|
|AFP1_POU2F1
|
|
|
|
|pou2f1_pax-6
|
|
|
|
|
|
|
|2
|----
|olfactory receptor 58 [Source:MarkerSymbol;Acc:MGI:1333790]
|
|AFP1_POU2F1
|
|
|
|
|pou2f1_pax-6
|
|
|
|afp1_pax-6
|
|
|
|3
|----
|olfactory receptor 104 [Source:MarkerSymbol;Acc:MGI:2177487]
|
|
|
|
|
|
|pou2f1_pax-6
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 116 [Source:MarkerSymbol;Acc:MGI:2177499]
|
|
|AIRE_FOXJ2
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 123 [Source:MarkerSymbol;Acc:MGI:2177506]
|
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 127 [Source:MarkerSymbol;Acc:MGI:2177510]
|
|
|
|
|
|
|pou2f1_pax-6
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 135 [Source:MarkerSymbol;Acc:MGI:2177518]
|
|
|
|
|
|
|
|
|
|afp1_pou1f1
|
|
|
|
|1
|----
|olfactory receptor 146 [Source:MarkerSymbol;Acc:MGI:2660711]
|
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 153 [Source:MarkerSymbol;Acc:MGI:1313138]
|cdx-2_IPF1
|AFP1_POU2F1
|
|
|ipf1_pou2f1
|pou1f1_pax-6
|pou2f1_pax-6
|
|
|afp1_pou1f1
|afp1_pax-6
|afpa_ipf1
|
|ipf1_pou1f1
|9
|----
|olfactory receptor 168 [Source:MarkerSymbol;Acc:MGI:3030002]
|cdx-2_IPF1
|
|
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 169 [Source:MarkerSymbol;Acc:MGI:3030003]
|cdx-2_IPF1
|AFP1_POU2F1
|
|
|ipf1_pou2f1
|
|pou2f1_pax-6
|
|
|
|afp1_pax-6
|
|
|ipf1_pou1f1
|6
|----
|olfactory receptor 170 [Source:MarkerSymbol;Acc:MGI:3030004]
|
|
|
|
|ipf1_pou2f1
|
|pou2f1_pax-6
|
|
|
|
|
|
|
|2
|----
|olfactory receptor 171 [Source:MarkerSymbol;Acc:MGI:3030005]
|
|
|
|
|
|pou1f1_pax-6
|
|aire_ipf1
|ipf1_pax-6
|
|
|
|pax-6_pax-6
|ipf1_pou1f1
|5
|----
|olfactory receptor 172 [Source:MarkerSymbol;Acc:MGI:3030006]
|
|
|
|cdx-2_foxj2
|
|
|
|
|
|
|
|
|
|
|
|----
|olfactory receptor 178 [Source:MarkerSymbol;Acc:MGI:3030012]
|
|
|
|
|ipf1_pou2f1
|
|
|aire_ipf1
|
|
|
|
|
|
|2
|----
|olfactory receptor 180 [Source:MarkerSymbol;Acc:MGI:3030014]
|
|
|AIRE_FOXJ2
|
|
|
|
|
|
|afp1_pou1f1
|
|
|
|
|2
|----
|olfactory receptor 181 [Source:MarkerSymbol;Acc:MGI:3030015]
|
|
|
|
|ipf1_pou2f1
|
|pou2f1_pax-6
|
|
|
|
|
|
|
|2
|----
|olfactory receptor 183 [Source:MarkerSymbol;Acc:MGI:3030017]
|
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 192 [Source:MarkerSymbol;Acc:MGI:3030026]
|
|
|
|
|ipf1_pou2f1
|
|
|aire_ipf1
|
|
|
|
|
|
|2
|----
|olfactory receptor 193 [Source:MarkerSymbol;Acc:MGI:3030027]
|
|
|
|
|
|
|
|
|
|afp1_pou1f1
|
|
|
|
|1
|----
|olfactory receptor 196 [Source:MarkerSymbol;Acc:MGI:3030030]
|
|
|
|
|ipf1_pou2f1
|pou1f1_pax-6
|pou2f1_pax-6
|
|ipf1_pax-6
|
|
|
|
|ipf1_pou1f1
|5
|----
|olfactory receptor 204 [Source:MarkerSymbol;Acc:MGI:3030038]
|
|
|
|
|ipf1_pou2f1
|pou1f1_pax-6
|pou2f1_pax-6
|
|ipf1_pax-6
|
|
|
|
|
|4
|----
|olfactory receptor 205 [Source:MarkerSymbol;Acc:MGI:3030039]
|
|
|
|cdx-2_foxj2
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 295 [Source:MarkerSymbol;Acc:MGI:3030129]
|
|
|
|
|ipf1_pou2f1
|
|pou2f1_pax-6
|
|ipf1_pax-6
|
|
|
|
|
|3
|----
|olfactory receptor 303 [Source:MarkerSymbol;Acc:MGI:3030137]
|
|
|
|
|
|
|pou2f1_pax-6
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 310 [Source:MarkerSymbol;Acc:MGI:3030144]
|cdx-2_IPF1
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|3
|----
|olfactory receptor 320 [Source:MarkerSymbol;Acc:MGI:3030154]
|
|
|
|
|
|
|
|
|
|
|
|afpa_ipf1
|
|
|1
|----
|olfactory receptor 339 [Source:MarkerSymbol;Acc:MGI:3030173]
|cdx-2_IPF1
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|2
|----
|olfactory receptor 342 [Source:MarkerSymbol;Acc:MGI:3030176]
|
|
|
|
|
|
|
|aire_ipf1
|
|
|
|
|
|
|1
|----
|olfactory receptor 385 [Source:MarkerSymbol;Acc:MGI:3030219]
|0
|AFP1_POU2F1
|
|
|
|
|
|
|
|afp1_pou1f1
|
|
|
|
|2
|----
|olfactory receptor 447 [Source:MarkerSymbol;Acc:MGI:3030281]
|
|
|
|
|
|
|pou2f1_pax-6
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 469 [Source:MarkerSymbol;Acc:MGI:3030303]
|
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|1
|----
|olfactory receptor 487 [Source:MarkerSymbol;Acc:MGI:3030321]
|
|
|
|
|
|pou1f1_pax-6
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 488 [Source:MarkerSymbol;Acc:MGI:3030322]
|
|AFP1_POU2F1
|
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 493 [Source:MarkerSymbol;Acc:MGI:3030327]
|
|AFP1_POU2F1
|
|cdx-2_foxj2
|ipf1_pou2f1
|pou1f1_pax-6
|pou2f1_pax-6
|
|
|afp1_pou1f1
|afp1_pax-6
|afpa_ipf1
|pax-6_pax-6
|
|9
|----
|olfactory receptor 494 [Source:MarkerSymbol;Acc:MGI:3030328]
|
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|1
|----
|olfactory receptor 495 [Source:MarkerSymbol;Acc:MGI:3030329]
|cdx-2_IPF1
|
|
|
|
|
|
|aire_ipf1
|
|
|
|
|
|ipf1_pou1f1
|3
|----
|olfactory receptor 498 [Source:MarkerSymbol;Acc:MGI:3030332]
|cdx-2_IPF1
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|2
|----
|olfactory receptor 502 [Source:MarkerSymbol;Acc:MGI:3030336]
|cdx-2_IPF1
|
|
|
|ipf1_pou2f1
|
|pou2f1_pax-6
|aire_ipf1
|ipf1_pax-6
|
|
|
|pax-6_pax-6
|
|6
|----
|olfactory receptor 508 [Source:MarkerSymbol;Acc:MGI:3030342]
|
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 509 [Source:MarkerSymbol;Acc:MGI:3030343]
|
|
|
|cdx-2_foxj2
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 510 [Source:MarkerSymbol;Acc:MGI:3030344]
|cdx-2_IPF1
|
|
|cdx-2_foxj2
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|3
|----
|olfactory receptor 512 [Source:MarkerSymbol;Acc:MGI:3030346]
|
|
|
|
|ipf1_pou2f1
|
|
|aire_ipf1
|
|
|
|
|
|
|2
|----
|olfactory receptor 516 [Source:MarkerSymbol;Acc:MGI:3030350]
|
|
|
|
|
|pou1f1_pax-6
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 645 [Source:MarkerSymbol;Acc:MGI:3030479]
|
|
|
|
|
|
|
|
|
|afp1_pou1f1
|
|
|
|
|1
|----
|olfactory receptor 666 [Source:MarkerSymbol;Acc:MGI:3030500]
|
|
|
|
|
|
|
|
|
|afp1_pou1f1
|
|
|
|
|1
|----
|olfactory receptor 715 [Source:MarkerSymbol;Acc:MGI:3030549]
|
|AFP1_POU2F1
|
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 723 [Source:MarkerSymbol;Acc:MGI:3030557]
|
|
|
|
|
|
|
|
|
|afp1_pou1f1
|
|afpa_ipf1
|
|ipf1_pou1f1
|3
|----
|olfactory receptor 724 [Source:MarkerSymbol;Acc:MGI:3030558]
|
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|2
|----
|olfactory receptor 765 [Source:MarkerSymbol;Acc:MGI:3030599]
|
|
|
|
|
|
|pou2f1_pax-6
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 771 [Source:MarkerSymbol;Acc:MGI:3030605]
|
|
|AIRE_FOXJ2
|cdx-2_foxj2
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 772 [Source:MarkerSymbol;Acc:MGI:3030606]
|
|
|AIRE_FOXJ2
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 774 [Source:MarkerSymbol;Acc:MGI:3030608]
|
|
|
|cdx-2_foxj2
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 777 [Source:MarkerSymbol;Acc:MGI:3030611]
|cdx-2_IPF1
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|2
|----
|olfactory receptor 798 [Source:MarkerSymbol;Acc:MGI:3030632]
|cdx-2_IPF1
|
|
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 800 [Source:MarkerSymbol;Acc:MGI:3030634]
|cdx-2_IPF1
|
|
|cdx-2_foxj2
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|2
|----
|olfactory receptor 801 [Source:MarkerSymbol;Acc:MGI:3030635]
|
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 803 [Source:MarkerSymbol;Acc:MGI:3030637]
|
|AFP1_POU2F1
|AIRE_FOXJ2
|
|ipf1_pou2f1
|
|
|aire_ipf1
|
|
|
|
|
|
|4
|----
|olfactory receptor 804 [Source:MarkerSymbol;Acc:MGI:3030638]
|
|
|AIRE_FOXJ2
|
|ipf1_pou2f1
|
|
|aire_ipf1
|
|
|
|
|
|ipf1_pou1f1
|4
|----
|olfactory receptor 806 [Source:MarkerSymbol;Acc:MGI:3030640]
|
|
|AIRE_FOXJ2
|
|
|
|
|aire_ipf1
|
|
|
|afpa_ipf1
|
|
|3
|----
|olfactory receptor 814 [Source:MarkerSymbol;Acc:MGI:3030648]
|cdx-2_IPF1
|AFP1_POU2F1
|
|cdx-2_foxj2
|ipf1_pou2f1
|
|pou2f1_pax-6
|
|ipf1_pax-6
|
|afp1_pax-6
|afpa_ipf1
|
|
|7
|----
|olfactory receptor 815 [Source:MarkerSymbol;Acc:MGI:3030649]
|
|
|
|
|
|
|pou2f1_pax-6
|
|ipf1_pax-6
|
|
|
|
|
|2
|----
|olfactory receptor 816 [Source:MarkerSymbol;Acc:MGI:3030650]
|
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|1
|----
|olfactory receptor 821 [Source:MarkerSymbol;Acc:MGI:3030655]
|
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|2
|----
|olfactory receptor 826 [Source:MarkerSymbol;Acc:MGI:3030660]
|
|
|
|
|ipf1_pou2f1
|pou1f1_pax-6
|
|
|ipf1_pax-6
|afp1_pou1f1
|afp1_pax-6
|afpa_ipf1
|
|ipf1_pou1f1
|7
|----
|olfactory receptor 862 [Source:MarkerSymbol;Acc:MGI:3030696]
|
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|1
|----
|olfactory receptor 945 [Source:MarkerSymbol;Acc:MGI:3030779]
|
|
|AIRE_FOXJ2
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 951 [Source:MarkerSymbol;Acc:MGI:3030785]
|
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|1
|----
|olfactory receptor 965 [Source:MarkerSymbol;Acc:MGI:3030799]
|
|
|AIRE_FOXJ2
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 971 [Source:MarkerSymbol;Acc:MGI:3030805]
|
|
|
|
|
|
|
|aire_ipf1
|
|
|
|afpa_ipf1
|
|
|2
|----
|olfactory receptor 1014 [Source:MarkerSymbol;Acc:MGI:3030848]
|
|AFP1_POU2F1
|
|
|
|
|
|
|
|afp1_pou1f1
|
|
|
|ipf1_pou1f1
|3
|----
|olfactory receptor 1029 [Source:MarkerSymbol;Acc:MGI:3030863]
|
|
|
|
|
|pou1f1_pax-6
|
|
|
|
|afp1_pax-6
|
|pax-6_pax-6
|0
|3
|----
|olfactory receptor 1030 [Source:MarkerSymbol;Acc:MGI:3030864]
|
|
|
|
|ipf1_pou2f1
|
|
|aire_ipf1
|ipf1_pax-6
|
|
|
|
|
|3
|----
|olfactory receptor 1032 [Source:MarkerSymbol;Acc:MGI:3030866]
|
|AFP1_POU2F1
|
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 1036 [Source:MarkerSymbol;Acc:MGI:3030870]
|
|AFP1_POU2F1
|
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 1071 [Source:MarkerSymbol;Acc:MGI:3030905]
|
|
|
|
|
|pou1f1_pax-6
|pou2f1_pax-6
|
|
|
|
|
|
|
|2
|----
|olfactory receptor 1094 [Source:MarkerSymbol;Acc:MGI:3030928]
|
|
|AIRE_FOXJ2
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|2
|----
|olfactory receptor 1115 [Source:MarkerSymbol;Acc:MGI:3030949]
|
|AFP1_POU2F1
|
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 1116 [Source:MarkerSymbol;Acc:MGI:3030950]
|cdx-2_IPF1
|AFP1_POU2F1
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|3
|----
|olfactory receptor 1121 [Source:MarkerSymbol;Acc:MGI:3030955]
|cdx-2_IPF1
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|2
|----
|olfactory receptor 1123 [Source:MarkerSymbol;Acc:MGI:3030957]
|
|
|
|
|ipf1_pou2f1
|pou1f1_pax-6
|pou2f1_pax-6
|
|ipf1_pax-6
|
|
|
|
|ipf1_pou1f1
|5
|----
|olfactory receptor 1126 [Source:MarkerSymbol;Acc:MGI:3030960]
|
|
|
|cdx-2_foxj2
|
|
|
|
|
|
|
|
|
|
|
|----
|olfactory receptor 1129 [Source:MarkerSymbol;Acc:MGI:3030963]
|cdx-2_IPF1
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|2
|----
|olfactory receptor 1130 [Source:MarkerSymbol;Acc:MGI:3030964]
|cdx-2_IPF1
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|2
|----
|olfactory receptor 1131 [Source:MarkerSymbol;Acc:MGI:3030965]
|
|
|
|
|
|pou1f1_pax-6
|pou2f1_pax-6
|
|
|
|
|
|
|
|2
|----
|olfactory receptor 1140 [Source:MarkerSymbol;Acc:MGI:3030974]
|
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|2
|----
|olfactory receptor 1145 [Source:MarkerSymbol;Acc:MGI:3030979]
|
|AFP1_POU2F1
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|2
|----
|olfactory receptor 1148 [Source:MarkerSymbol;Acc:MGI:3030982]
|
|
|
|
|
|pou1f1_pax-6
|
|
|
|afp1_pou1f1
|
|
|
|
|2
|----
|olfactory receptor 1151 [Source:MarkerSymbol;Acc:MGI:3030985]
|
|AFP1_POU2F1
|
|
|ipf1_pou2f1
|
|
|
|
|afp1_pou1f1
|
|
|
|ipf1_pou1f1
|4
|----
|olfactory receptor 1152 [Source:MarkerSymbol;Acc:MGI:3030986]
|
|
|
|
|ipf1_pou2f1
|pou1f1_pax-6
|
|
|ipf1_pax-6
|
|
|
|
|ipf1_pou1f1
|4
|----
|olfactory receptor 1153 [Source:MarkerSymbol;Acc:MGI:3030987]
|cdx-2_IPF1
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|afpa_ipf1
|
|ipf1_pou1f1
|4
|----
|olfactory receptor 1161 [Source:MarkerSymbol;Acc:MGI:3030995]
|cdx-2_IPF1
|
|
|
|
|pou1f1_pax-6
|
|aire_ipf1
|ipf1_pax-6
|afp1_pou1f1
|
|afpa_ipf1
|
|ipf1_pou1f1
|7
|----
|olfactory receptor 1178 [Source:MarkerSymbol;Acc:MGI:3031012]
|
|AFP1_POU2F1
|
|
|
|
|
|
|
|afp1_pou1f1
|
|
|
|
|2
|----
|olfactory receptor 1184 [Source:MarkerSymbol;Acc:MGI:3031018]
|cdx-2_IPF1
|
|
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 1189 [Source:MarkerSymbol;Acc:MGI:3031023]
|
|
|
|
|
|
|
|
|ipf1_pax-6
|
|
|
|
|
|1
|----
|olfactory receptor 1193 [Source:MarkerSymbol;Acc:MGI:3031027]
|cdx-2_IPF1
|
|AIRE_FOXJ2
|
|
|
|
|
|
|
|
|
|
|
|2
|----
|olfactory receptor 1202 [Source:MarkerSymbol;Acc:MGI:3031036]
|
|
|
|
|
|
|
|
|
|
|
|afpa_ipf1
|0
|ipf1_pou1f1
|2
|----
|olfactory receptor 1203 [Source:MarkerSymbol;Acc:MGI:3031037]
|0
|AFP1_POU2F1
|
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 1257 [Source:MarkerSymbol;Acc:MGI:3031091]
|
|
|
|
|ipf1_pou2f1
|
|pou2f1_pax-6
|
|ipf1_pax-6
|
|
|
|
|ipf1_pou1f1
|4
|----
|olfactory receptor 1259 [Source:MarkerSymbol;Acc:MGI:3031093]
|
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|1
|----
|olfactory receptor 1276 [Source:MarkerSymbol;Acc:MGI:3031110]
|
|
|
|
|ipf1_pou2f1
|pou1f1_pax-6
|pou2f1_pax-6
|
|ipf1_pax-6
|
|
|
|
|ipf1_pou1f1
|5
|----
|olfactory receptor 1278 [Source:MarkerSymbol;Acc:MGI:3031112]
|
|
|
|cdx-2_foxj2
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|1
|----
|olfactory receptor 1279 [Source:MarkerSymbol;Acc:MGI:3031113]
|
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|1
|----
|olfactory receptor 1283 [Source:MarkerSymbol;Acc:MGI:3031117]
|
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|1
|----
|olfactory receptor 1287 [Source:MarkerSymbol;Acc:MGI:3031121]
|
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|1
|----
|olfactory receptor 1302 [Source:MarkerSymbol;Acc:MGI:3031136]
|
|
|
|cdx-2_foxj2
|
|
|
|
|
|
|
|
|
|
|
|----
|olfactory receptor 1362 [Source:MarkerSymbol;Acc:MGI:3031196]
|
|
|
|
|
|
|
|
|
|afp1_pou1f1
|
|
|
|
|1
|----
|olfactory receptor 1406 [Source:MarkerSymbol;Acc:MGI:3031240]
|
|
|
|
|
|
|pou2f1_pax-6
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 1426 [Source:MarkerSymbol;Acc:MGI:3031260]
|
|
|
|
|
|
|
|
|
|
|
|
|
|ipf1_pou1f1
|1
|----
|olfactory receptor 1436 [Source:MarkerSymbol;Acc:MGI:3031270]
|cdx-2_IPF1
|
|
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 1448 [Source:MarkerSymbol;Acc:MGI:3031282]
|
|
|
|cdx-2_foxj2
|
|
|pou2f1_pax-6
|
|
|
|
|
|pax-6_pax-6
|
|2
|----
|olfactory receptor 1451 [Source:MarkerSymbol;Acc:MGI:3031285]
|
|
|
|
|
|
|
|
|
|afp1_pou1f1
|
|
|
|
|1
|----
|olfactory receptor 1457 [Source:MarkerSymbol;Acc:MGI:3031291]
|
|
|
|
|ipf1_pou2f1
|pou1f1_pax-6
|pou2f1_pax-6
|
|ipf1_pax-6
|
|
|
|
|ipf1_pou1f1
|5
|----
|olfactory receptor 1480 [Source:MarkerSymbol;Acc:MGI:3031314]
|
|
|
|
|ipf1_pou2f1
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 1495 [Source:MarkerSymbol;Acc:MGI:3031329]
|
|
|
|
|
|
|
|
|
|
|afp1_pax-6
|
|
|
|1
|----
|olfactory receptor 1508 [Source:MarkerSymbol;Acc:MGI:3031342]
|
|
|AIRE_FOXJ2
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|olfactory receptor 1510 [Source:MarkerSymbol;Acc:MGI:3031344]
|
|
|
|
|
|
|pou2f1_pax-6
|
|
|
|
|
|
|
|1
|----
|Olfactory receptor MOR218-3. [Source:Uniprot/SPTREMBL;Acc:Q8VF67]
|
|AFP1_POU2F1
|
|
|
|
|
|
|
|
|
|
|
|
|1
|----
|
|22
|20
|12
|119
|43
|17
|27
|13
|16
|17
|8
|11
|5
|38
|250
|----
|}
 
 
Return to [[Hypothetical protein LOC144577]]

Latest revision as of 00:42, 12 June 2007

Gaf Domain

New avenues in protein function prediction http://www.proteinscience.org/cgi/content/full/15/6/1527


Sequence -> Function

  • Detecting Protein Function and Protein-Protein Interactions from Genome Sequences

Edward M. Marcotte, Matteo Pellegrini, Ho-Leung Ng, Danny W. Rice, Todd O. Yeates, and David Eisenberg (30 July 1999) Science 285 (5428), 751. [DOI: 10.1126/science.285.5428.751] [1]


Structure -> Function

  • Proknow

Pal D and Eisenberg D. (2005). Inference of protein function from protein structure. Structure 13, 121-130. [2]

Laskowski R A, Watson J D, Thornton J M (2005). ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Res., 33, W89-W93. [4]

Results:

Locate http://locate.imb.uq.edu.au LOCATE is a curated database that houses data describing the membrane organization and subcellular localization of proteins from the RIKEN FANTOM3 mouse protein sequence set. The membrane organization is predicted by the high-throughput, computational pipeline MemO. The subcellular locations were determined by a high-throughput, immunofluorescence-based assay and by manually reviewing peer-reviewed publications.

2gnx locate.GIF


2gnx BlastP

STRING: a database of predicted functional associations between proteins. String returned no results.

CDART http://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi?cmd=rps - when given a protein query sequence, CDART displays the functional domains that make up the protein and lists proteins with similar domain architectures. Returns no results for mouse sequence.

Pfam didn't work...http://www.sanger.ac.uk/cgi-bin/Pfam/getblast?id=2103981H86007039eB664 - protein families

Profunc http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/profunc/GetResults.pl?source=profunc&user_id=ay41&code=073806

Interpro returned no results - protein domain prediction.

Mammalian Orthology http://www.informatics.jax.org/searches/homology_report.cgi?_Marker_key=92352 -- Genes

Mammalian Orthology http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=homologene&dopt=HomoloGene&list_uids=17580 --Proteins

GEGG biochemical pathways

KEGG pathways which involve cAMP


MicroArray Analysis

Entrez gene ID 270802 1. click link to 270802 2. click link to symatlas 3. find correlated

Symatlas is a database full of microarray data for genes in different tissues. It has the function to find correlated microarray data which brings up genes with similar expression data.

The results of a correlation search give a fair few corresponding genes with similar microarray expressions, however the presence of several olfactory receptors seemed interesting : Olfr435, Olfr57, Olfr829, Olfr30.

As the structural team have found a GAF domain on the C-terminal, i tried to find a link between olfactory receptors and the GAF domain. - related to cGMP and PDEs???

Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor

cis-regulatory elements

Cis Red - The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, similarity, clustering, co-occurrence and coexpression calculations. regulatory elements in BC048403

Annotation-based Co-occurring Motif Pattern

[5]

aire-foxj2

pax6-pax6

pou1f1-pax6

ipf1-pou1f1

The following table portrays the entire 120 olfactory receptors corresponding to the 14 modules listed accross the top. This table has been cut down to olfactory receptors that have 3 or more co-occuring modules, and is presented in the report.


cdx-2_IPF1 AFP1_POU2F1 AIRE_FOXJ2 cdx-2_foxj2 ipf1_pou2f1 pou1f1_pax-6 pou2f1_pax-6 aire_ipf1 ipf1_pax-6 afp1_pou1f1 afp1_pax-6 afpa_ipf1 pax-6_pax-6 ipf1_pou1f1 count
olfactory receptor 39 [Source:MarkerSymbol;Acc:MGI:1313142] ipf1_pou2f1 1
olfactory receptor 43 [Source:MarkerSymbol;Acc:MGI:1333770] AFP1_POU2F1 pou2f1_pax-6 2
olfactory receptor 58 [Source:MarkerSymbol;Acc:MGI:1333790] AFP1_POU2F1 pou2f1_pax-6 afp1_pax-6 3
olfactory receptor 104 [Source:MarkerSymbol;Acc:MGI:2177487] pou2f1_pax-6 1
olfactory receptor 116 [Source:MarkerSymbol;Acc:MGI:2177499] AIRE_FOXJ2 1
olfactory receptor 123 [Source:MarkerSymbol;Acc:MGI:2177506] ipf1_pou2f1 1
olfactory receptor 127 [Source:MarkerSymbol;Acc:MGI:2177510] pou2f1_pax-6 1
olfactory receptor 135 [Source:MarkerSymbol;Acc:MGI:2177518] afp1_pou1f1 1
olfactory receptor 146 [Source:MarkerSymbol;Acc:MGI:2660711] ipf1_pou2f1 1
olfactory receptor 153 [Source:MarkerSymbol;Acc:MGI:1313138] cdx-2_IPF1 AFP1_POU2F1 ipf1_pou2f1 pou1f1_pax-6 pou2f1_pax-6 afp1_pou1f1 afp1_pax-6 afpa_ipf1 ipf1_pou1f1 9
olfactory receptor 168 [Source:MarkerSymbol;Acc:MGI:3030002] cdx-2_IPF1 1
olfactory receptor 169 [Source:MarkerSymbol;Acc:MGI:3030003] cdx-2_IPF1 AFP1_POU2F1 ipf1_pou2f1 pou2f1_pax-6 afp1_pax-6 ipf1_pou1f1 6
olfactory receptor 170 [Source:MarkerSymbol;Acc:MGI:3030004] ipf1_pou2f1 pou2f1_pax-6 2
olfactory receptor 171 [Source:MarkerSymbol;Acc:MGI:3030005] pou1f1_pax-6 aire_ipf1 ipf1_pax-6 pax-6_pax-6 ipf1_pou1f1 5
olfactory receptor 172 [Source:MarkerSymbol;Acc:MGI:3030006] cdx-2_foxj2
olfactory receptor 178 [Source:MarkerSymbol;Acc:MGI:3030012] ipf1_pou2f1 aire_ipf1 2
olfactory receptor 180 [Source:MarkerSymbol;Acc:MGI:3030014] AIRE_FOXJ2 afp1_pou1f1 2
olfactory receptor 181 [Source:MarkerSymbol;Acc:MGI:3030015] ipf1_pou2f1 pou2f1_pax-6 2
olfactory receptor 183 [Source:MarkerSymbol;Acc:MGI:3030017] ipf1_pou2f1 1
olfactory receptor 192 [Source:MarkerSymbol;Acc:MGI:3030026] ipf1_pou2f1 aire_ipf1 2
olfactory receptor 193 [Source:MarkerSymbol;Acc:MGI:3030027] afp1_pou1f1 1
olfactory receptor 196 [Source:MarkerSymbol;Acc:MGI:3030030] ipf1_pou2f1 pou1f1_pax-6 pou2f1_pax-6 ipf1_pax-6 ipf1_pou1f1 5
olfactory receptor 204 [Source:MarkerSymbol;Acc:MGI:3030038] ipf1_pou2f1 pou1f1_pax-6 pou2f1_pax-6 ipf1_pax-6 4
olfactory receptor 205 [Source:MarkerSymbol;Acc:MGI:3030039] cdx-2_foxj2 ipf1_pou2f1 1
olfactory receptor 295 [Source:MarkerSymbol;Acc:MGI:3030129] ipf1_pou2f1 pou2f1_pax-6 ipf1_pax-6 3
olfactory receptor 303 [Source:MarkerSymbol;Acc:MGI:3030137] pou2f1_pax-6 1
olfactory receptor 310 [Source:MarkerSymbol;Acc:MGI:3030144] cdx-2_IPF1 ipf1_pou2f1 ipf1_pou1f1 3
olfactory receptor 320 [Source:MarkerSymbol;Acc:MGI:3030154] afpa_ipf1 1
olfactory receptor 339 [Source:MarkerSymbol;Acc:MGI:3030173] cdx-2_IPF1 ipf1_pou2f1 2
olfactory receptor 342 [Source:MarkerSymbol;Acc:MGI:3030176] aire_ipf1 1
olfactory receptor 385 [Source:MarkerSymbol;Acc:MGI:3030219] 0 AFP1_POU2F1 afp1_pou1f1 2
olfactory receptor 447 [Source:MarkerSymbol;Acc:MGI:3030281] pou2f1_pax-6 1
olfactory receptor 469 [Source:MarkerSymbol;Acc:MGI:3030303] ipf1_pou1f1 1
olfactory receptor 487 [Source:MarkerSymbol;Acc:MGI:3030321] pou1f1_pax-6 1
olfactory receptor 488 [Source:MarkerSymbol;Acc:MGI:3030322] AFP1_POU2F1 1
olfactory receptor 493 [Source:MarkerSymbol;Acc:MGI:3030327] AFP1_POU2F1 cdx-2_foxj2 ipf1_pou2f1 pou1f1_pax-6 pou2f1_pax-6 afp1_pou1f1 afp1_pax-6 afpa_ipf1 pax-6_pax-6 9
olfactory receptor 494 [Source:MarkerSymbol;Acc:MGI:3030328] ipf1_pou1f1 1
olfactory receptor 495 [Source:MarkerSymbol;Acc:MGI:3030329] cdx-2_IPF1 aire_ipf1 ipf1_pou1f1 3
olfactory receptor 498 [Source:MarkerSymbol;Acc:MGI:3030332] cdx-2_IPF1 ipf1_pou1f1 2
olfactory receptor 502 [Source:MarkerSymbol;Acc:MGI:3030336] cdx-2_IPF1 ipf1_pou2f1 pou2f1_pax-6 aire_ipf1 ipf1_pax-6 pax-6_pax-6 6
olfactory receptor 508 [Source:MarkerSymbol;Acc:MGI:3030342] ipf1_pou2f1 1
olfactory receptor 509 [Source:MarkerSymbol;Acc:MGI:3030343] cdx-2_foxj2 1
olfactory receptor 510 [Source:MarkerSymbol;Acc:MGI:3030344] cdx-2_IPF1 cdx-2_foxj2 ipf1_pou2f1 ipf1_pou1f1 3
olfactory receptor 512 [Source:MarkerSymbol;Acc:MGI:3030346] ipf1_pou2f1 aire_ipf1 2
olfactory receptor 516 [Source:MarkerSymbol;Acc:MGI:3030350] pou1f1_pax-6 1
olfactory receptor 645 [Source:MarkerSymbol;Acc:MGI:3030479] afp1_pou1f1 1
olfactory receptor 666 [Source:MarkerSymbol;Acc:MGI:3030500] afp1_pou1f1 1
olfactory receptor 715 [Source:MarkerSymbol;Acc:MGI:3030549] AFP1_POU2F1 1
olfactory receptor 723 [Source:MarkerSymbol;Acc:MGI:3030557] afp1_pou1f1 afpa_ipf1 ipf1_pou1f1 3
olfactory receptor 724 [Source:MarkerSymbol;Acc:MGI:3030558] ipf1_pou2f1 ipf1_pou1f1 2
olfactory receptor 765 [Source:MarkerSymbol;Acc:MGI:3030599] pou2f1_pax-6 1
olfactory receptor 771 [Source:MarkerSymbol;Acc:MGI:3030605] AIRE_FOXJ2 cdx-2_foxj2 1
olfactory receptor 772 [Source:MarkerSymbol;Acc:MGI:3030606] AIRE_FOXJ2 1
olfactory receptor 774 [Source:MarkerSymbol;Acc:MGI:3030608] cdx-2_foxj2 1
olfactory receptor 777 [Source:MarkerSymbol;Acc:MGI:3030611] cdx-2_IPF1 ipf1_pou1f1 2
olfactory receptor 798 [Source:MarkerSymbol;Acc:MGI:3030632] cdx-2_IPF1 1
olfactory receptor 800 [Source:MarkerSymbol;Acc:MGI:3030634] cdx-2_IPF1 cdx-2_foxj2 ipf1_pou2f1 2
olfactory receptor 801 [Source:MarkerSymbol;Acc:MGI:3030635] ipf1_pou2f1 1
olfactory receptor 803 [Source:MarkerSymbol;Acc:MGI:3030637] AFP1_POU2F1 AIRE_FOXJ2 ipf1_pou2f1 aire_ipf1 4
olfactory receptor 804 [Source:MarkerSymbol;Acc:MGI:3030638] AIRE_FOXJ2 ipf1_pou2f1 aire_ipf1 ipf1_pou1f1 4
olfactory receptor 806 [Source:MarkerSymbol;Acc:MGI:3030640] AIRE_FOXJ2 aire_ipf1 afpa_ipf1 3
olfactory receptor 814 [Source:MarkerSymbol;Acc:MGI:3030648] cdx-2_IPF1 AFP1_POU2F1 cdx-2_foxj2 ipf1_pou2f1 pou2f1_pax-6 ipf1_pax-6 afp1_pax-6 afpa_ipf1 7
olfactory receptor 815 [Source:MarkerSymbol;Acc:MGI:3030649] pou2f1_pax-6 ipf1_pax-6 2
olfactory receptor 816 [Source:MarkerSymbol;Acc:MGI:3030650] ipf1_pou1f1 1
olfactory receptor 821 [Source:MarkerSymbol;Acc:MGI:3030655] ipf1_pou2f1 ipf1_pou1f1 2
olfactory receptor 826 [Source:MarkerSymbol;Acc:MGI:3030660] ipf1_pou2f1 pou1f1_pax-6 ipf1_pax-6 afp1_pou1f1 afp1_pax-6 afpa_ipf1 ipf1_pou1f1 7
olfactory receptor 862 [Source:MarkerSymbol;Acc:MGI:3030696] ipf1_pou1f1 1
olfactory receptor 945 [Source:MarkerSymbol;Acc:MGI:3030779] AIRE_FOXJ2 1
olfactory receptor 951 [Source:MarkerSymbol;Acc:MGI:3030785] ipf1_pou1f1 1
olfactory receptor 965 [Source:MarkerSymbol;Acc:MGI:3030799] AIRE_FOXJ2 1
olfactory receptor 971 [Source:MarkerSymbol;Acc:MGI:3030805] aire_ipf1 afpa_ipf1 2
olfactory receptor 1014 [Source:MarkerSymbol;Acc:MGI:3030848] AFP1_POU2F1 afp1_pou1f1 ipf1_pou1f1 3
olfactory receptor 1029 [Source:MarkerSymbol;Acc:MGI:3030863] pou1f1_pax-6 afp1_pax-6 pax-6_pax-6 0 3
olfactory receptor 1030 [Source:MarkerSymbol;Acc:MGI:3030864] ipf1_pou2f1 aire_ipf1 ipf1_pax-6 3
olfactory receptor 1032 [Source:MarkerSymbol;Acc:MGI:3030866] AFP1_POU2F1 1
olfactory receptor 1036 [Source:MarkerSymbol;Acc:MGI:3030870] AFP1_POU2F1 1
olfactory receptor 1071 [Source:MarkerSymbol;Acc:MGI:3030905] pou1f1_pax-6 pou2f1_pax-6 2
olfactory receptor 1094 [Source:MarkerSymbol;Acc:MGI:3030928] AIRE_FOXJ2 ipf1_pou2f1 2
olfactory receptor 1115 [Source:MarkerSymbol;Acc:MGI:3030949] AFP1_POU2F1 1
olfactory receptor 1116 [Source:MarkerSymbol;Acc:MGI:3030950] cdx-2_IPF1 AFP1_POU2F1 ipf1_pou2f1 3
olfactory receptor 1121 [Source:MarkerSymbol;Acc:MGI:3030955] cdx-2_IPF1 ipf1_pou2f1 2
olfactory receptor 1123 [Source:MarkerSymbol;Acc:MGI:3030957] ipf1_pou2f1 pou1f1_pax-6 pou2f1_pax-6 ipf1_pax-6 ipf1_pou1f1 5
olfactory receptor 1126 [Source:MarkerSymbol;Acc:MGI:3030960] cdx-2_foxj2
olfactory receptor 1129 [Source:MarkerSymbol;Acc:MGI:3030963] cdx-2_IPF1 ipf1_pou1f1 2
olfactory receptor 1130 [Source:MarkerSymbol;Acc:MGI:3030964] cdx-2_IPF1 ipf1_pou1f1 2
olfactory receptor 1131 [Source:MarkerSymbol;Acc:MGI:3030965] pou1f1_pax-6 pou2f1_pax-6 2
olfactory receptor 1140 [Source:MarkerSymbol;Acc:MGI:3030974] ipf1_pou2f1 ipf1_pou1f1 2
olfactory receptor 1145 [Source:MarkerSymbol;Acc:MGI:3030979] AFP1_POU2F1 ipf1_pou2f1 2
olfactory receptor 1148 [Source:MarkerSymbol;Acc:MGI:3030982] pou1f1_pax-6 afp1_pou1f1 2
olfactory receptor 1151 [Source:MarkerSymbol;Acc:MGI:3030985] AFP1_POU2F1 ipf1_pou2f1 afp1_pou1f1 ipf1_pou1f1 4
olfactory receptor 1152 [Source:MarkerSymbol;Acc:MGI:3030986] ipf1_pou2f1 pou1f1_pax-6 ipf1_pax-6 ipf1_pou1f1 4
olfactory receptor 1153 [Source:MarkerSymbol;Acc:MGI:3030987] cdx-2_IPF1 ipf1_pou2f1 afpa_ipf1 ipf1_pou1f1 4
olfactory receptor 1161 [Source:MarkerSymbol;Acc:MGI:3030995] cdx-2_IPF1 pou1f1_pax-6 aire_ipf1 ipf1_pax-6 afp1_pou1f1 afpa_ipf1 ipf1_pou1f1 7
olfactory receptor 1178 [Source:MarkerSymbol;Acc:MGI:3031012] AFP1_POU2F1 afp1_pou1f1 2
olfactory receptor 1184 [Source:MarkerSymbol;Acc:MGI:3031018] cdx-2_IPF1 1
olfactory receptor 1189 [Source:MarkerSymbol;Acc:MGI:3031023] ipf1_pax-6 1
olfactory receptor 1193 [Source:MarkerSymbol;Acc:MGI:3031027] cdx-2_IPF1 AIRE_FOXJ2 2
olfactory receptor 1202 [Source:MarkerSymbol;Acc:MGI:3031036] afpa_ipf1 0 ipf1_pou1f1 2
olfactory receptor 1203 [Source:MarkerSymbol;Acc:MGI:3031037] 0 AFP1_POU2F1 1
olfactory receptor 1257 [Source:MarkerSymbol;Acc:MGI:3031091] ipf1_pou2f1 pou2f1_pax-6 ipf1_pax-6 ipf1_pou1f1 4
olfactory receptor 1259 [Source:MarkerSymbol;Acc:MGI:3031093] ipf1_pou1f1 1
olfactory receptor 1276 [Source:MarkerSymbol;Acc:MGI:3031110] ipf1_pou2f1 pou1f1_pax-6 pou2f1_pax-6 ipf1_pax-6 ipf1_pou1f1 5
olfactory receptor 1278 [Source:MarkerSymbol;Acc:MGI:3031112] cdx-2_foxj2 ipf1_pou1f1 1
olfactory receptor 1279 [Source:MarkerSymbol;Acc:MGI:3031113] ipf1_pou1f1 1
olfactory receptor 1283 [Source:MarkerSymbol;Acc:MGI:3031117] ipf1_pou1f1 1
olfactory receptor 1287 [Source:MarkerSymbol;Acc:MGI:3031121] ipf1_pou1f1 1
olfactory receptor 1302 [Source:MarkerSymbol;Acc:MGI:3031136] cdx-2_foxj2
olfactory receptor 1362 [Source:MarkerSymbol;Acc:MGI:3031196] afp1_pou1f1 1
olfactory receptor 1406 [Source:MarkerSymbol;Acc:MGI:3031240] pou2f1_pax-6 1
olfactory receptor 1426 [Source:MarkerSymbol;Acc:MGI:3031260] ipf1_pou1f1 1
olfactory receptor 1436 [Source:MarkerSymbol;Acc:MGI:3031270] cdx-2_IPF1 1
olfactory receptor 1448 [Source:MarkerSymbol;Acc:MGI:3031282] cdx-2_foxj2 pou2f1_pax-6 pax-6_pax-6 2
olfactory receptor 1451 [Source:MarkerSymbol;Acc:MGI:3031285] afp1_pou1f1 1
olfactory receptor 1457 [Source:MarkerSymbol;Acc:MGI:3031291] ipf1_pou2f1 pou1f1_pax-6 pou2f1_pax-6 ipf1_pax-6 ipf1_pou1f1 5
olfactory receptor 1480 [Source:MarkerSymbol;Acc:MGI:3031314] ipf1_pou2f1 1
olfactory receptor 1495 [Source:MarkerSymbol;Acc:MGI:3031329] afp1_pax-6 1
olfactory receptor 1508 [Source:MarkerSymbol;Acc:MGI:3031342] AIRE_FOXJ2 1
olfactory receptor 1510 [Source:MarkerSymbol;Acc:MGI:3031344] pou2f1_pax-6 1
Olfactory receptor MOR218-3. [Source:Uniprot/SPTREMBL;Acc:Q8VF67] AFP1_POU2F1 1
22 20 12 119 43 17 27 13 16 17 8 11 5 38 250


Return to Hypothetical protein LOC144577

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