LOC56985 Evolution Main: Difference between revisions
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[[top 60 blast results]] | [[top 60 blast results]] | ||
The edited version of the blast search results used for the clustal alignment can be seen below. Please note that {H} stands for hypothetical protein and {P} stands for predicted protein. | For the purpose of creating a phylogenetic tree, sequences from the same species were removed and any sequences containing large gaps in the intial CLUSTAL alignment were also removed. | ||
The edited version of the blast search results used for the final clustal alignment can be seen below. Please note that {H} stands for hypothetical protein and {P} stands for predicted protein. | |||
[[alignment sequences]] | [[alignment sequences]] | ||
'''CLUSTALX alignement''' | |||
The results for the CLUSTALX alignment can be viewed below. | |||
The "*" above the sequences denotes amino acid resudues that are conserved through all species. A ":" means that the amino acid is mostly conserved and a "." denottes that it is less consverved. | |||
[[clustal alignment]] | |||
Revision as of 09:44, 3 June 2008
BLASTP Search Results
The initial top 60 blast search results, given in FASTA format, can be found in the link below.
For the purpose of creating a phylogenetic tree, sequences from the same species were removed and any sequences containing large gaps in the intial CLUSTAL alignment were also removed. The edited version of the blast search results used for the final clustal alignment can be seen below. Please note that {H} stands for hypothetical protein and {P} stands for predicted protein.
CLUSTALX alignement
The results for the CLUSTALX alignment can be viewed below. The "*" above the sequences denotes amino acid resudues that are conserved through all species. A ":" means that the amino acid is mostly conserved and a "." denottes that it is less consverved.
