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<big>'''Welcome to the MD and Huber Group Wiki'''</big>
<big>'''Welcome to the MD Group Wiki'''</big>


On this web site we provide information about our groups that will hopefully be also useful to other people. Please feel free to contact us for any feedback.
On this web site we provide information about our groups that will hopefully be also useful to other people. Please feel free to contact us for any feedback.
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* A group meeting timetable and a store of peoples' presentations
* A group meeting timetable and a store of peoples' presentations


== Molecular Dynamics group (Alan Mark) ==
Automated Force Field Topology Builder [ATB] and Repository for the GROMOS family of force fields
http://compbio.biosci.uq.edu.au/atb/
* [http://compbio.biosci.uq.edu.au/ Group overview]
* [[PeopleMark|People]]
* [[Publications Alan Mark|Publications]]
* [[ResourcesMark|Computing Resources]]
* [http://compbio.biosci.uq.edu.au/education/ MD Tutorials]
* [[Lectures]]
* [[Pictures]]
* [[Media:Group_Tasks.doc | Group Tasks]]
* [[Automated Topology Builder|Automated Force Field Topology Builder (ATB) and Repository]]
* [[ATB Trajectory Repository Guide]]
=== Getting started ===
* [[New Lab Members | Basic Info for New Lab Members]]
* [[Introduction_To_Computing | Computing Information for New Users]]
* [[Useful Links]]


== Biomolecular modelling group (Thomas Huber) ==
== Thursday Meeting Timetable ==


* [[OverviewHuber|Group overview]]
The Seminars are held weekly. You can check the most up-to-date schedule [[meeting schedule|here]].
* [[People Huber Group|People]]
* [[PublicationsHuber|Publications]]
* [[ResourcesHuber|Resources]]


== Molecular Dynamics group (Alan Mark) ==
The research/literature seminars alternate with either a Theoretical Seminar or a Journal Club which have dedicated wiki pages:
* [http://compbio.chemistry.uq.edu.au/md/ Group overview]
* [[Theoretical Seminars]]
* [[PeopleMark|People]]
 
* [[PublicationsMark|Publications]]
You can share articles/reviews that you find interesting and relevant for the group. You can upload them on the [[The Paper Pool|Paper pool wiki page]]. They can also be used for a Journal Club or a Theoretical Seminar.
* [[ResourcesMark|Resources]]


== CCMS/MD + Huber Thursday Meeting Timetable ==


This is the current CCMS/MD meeting schedule. This is the '''most up-to-date version'''.
*Please '''do not edit this''' without informing David
*Please '''add you talks''' for archive and reference reasons. This can be achieved by uploading the file (left hand toolbox) and linking to it.
** If you get comlaints about file size being to large - simply click upload anyway.


{{#widget:Google Calendar
|id=si8ocqn3duj6f8int3h57jm8qeunplut@import.calendar.google.com
|color=528800
|id=p2m2av9dhrh4n1ub7jlsc68s7o@group.calendar.google.com
|color=2952A3
|id=usa@holiday.calendar.google.com
|color=B1440E
|title=TechPresentations, NYCResistor, US Holidays
}}


== Group Task List ==


{| border="1"
{| class="taskList" border="1"
|-
! Task
! Responsible Person(s)
|-
| Purchasing
| Kasia, Megan
|-
| Printer
| Nandhitha
|-
| Wiki Manager
| Martin, David
|-
| MDGroup Web Pages
| -
|-
| Workstation Machines
| Martin, Karmen
|-
|-
!Date
| Server and Cluster
!Research Seminar
| Martin, Karmen
!Literature Seminar
|-
|-
|2 August
| Visitor Orientation
|Zrinka
| Karmen
|Seth
|-
|-
|9 August
| Joint Group Meetings
|Ying
| Lachlan, Nanditha
|Matt
|-
|-
|16 August
| Group Seminars
|Thomas
| David, Megan
|Maria
|-
|-
|23 August
| Kiwi
|Marlies
| Lachlan
|'''SPARE''' *
|-
|-
|30 August
| Display TV
|Christophe
| Michael
|Aijun
|-
|-
|6 September
| NCI Quota
|Itamar
| David
|Ying
|-
|-
|13 September
| GROMOS Software
|AJ
| Alpesh
|Michael
|-
|-
|20 September
| GROMACS Software
|David
| Alpesh
|Marlies
|-
|-
|27 September
| ATB
|Matt
| Alpesh, Martin
|Christophe
|-
|-
|4 October
| New Account Creation
|Alpesh
| Michael
|Alpesh
|-
|-
|11 October
| MD Calender
|Michael
| Evelyn
|Pierre
|}
|}


'''*''' If this remains a spare slot, Mitchell may give a talk on open science. That is, the use of wiki's, open access journals, Nature preceedings, online lab books etc. This talk is dependent on interest levels. Mitch
== Teaching Resource ==
 
[[BIOL3004_2009|Biol3004 2009]]
 
[[BIOL3004_2008|Biol3004 2008]]


== Teaching Resource ==
[[BIOL3004_2007|Biol3004 2007]]


[[BIOL3004_2007|Biol3004]]
[[SCI1000_2008|Sci1000]]


[[SP_2008_1|Student projects 2008]]


== Queensland Protein Group ==
== Queensland Protein Group ==


[[East Coast Protein Meeting 2007]]
[[East Coast Protein Meeting 2011]]
 
== Bimolecular Modeling School==
*[http://compbio.biosci.uq.edu.au/MDschool Biomolecular Modeling 2008]
 
=== Calendar ===
 
See [[calendar]]
 




Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
== Getting started ==




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* [http://mail.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
* [http://mail.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]


----
== Joint Group Meetings ==
 
Meetings are held every last Friday of the month
 
== Test new page ==
[[test page]]

Latest revision as of 00:52, 9 September 2020

Welcome to the MD Group Wiki

On this web site we provide information about our groups that will hopefully be also useful to other people. Please feel free to contact us for any feedback. For local access there is:

  • A repository for research papers with some annotation as to their content and techniques
  • A repository of knowledge pertaining to Molecular Dynamics, NMR and Crystallography that helps to give everyone a thorough grounding in the basic theory and methodology of these fields
  • A group meeting timetable and a store of peoples' presentations

Molecular Dynamics group (Alan Mark)

Automated Force Field Topology Builder [ATB] and Repository for the GROMOS family of force fields http://compbio.biosci.uq.edu.au/atb/

Getting started

Thursday Meeting Timetable

The Seminars are held weekly. You can check the most up-to-date schedule here.

The research/literature seminars alternate with either a Theoretical Seminar or a Journal Club which have dedicated wiki pages:

You can share articles/reviews that you find interesting and relevant for the group. You can upload them on the Paper pool wiki page. They can also be used for a Journal Club or a Theoretical Seminar.


{{#widget:Google Calendar |id=si8ocqn3duj6f8int3h57jm8qeunplut@import.calendar.google.com |color=528800 |id=p2m2av9dhrh4n1ub7jlsc68s7o@group.calendar.google.com |color=2952A3 |id=usa@holiday.calendar.google.com |color=B1440E |title=TechPresentations, NYCResistor, US Holidays }}

Group Task List

Task Responsible Person(s)
Purchasing Kasia, Megan
Printer Nandhitha
Wiki Manager Martin, David
MDGroup Web Pages -
Workstation Machines Martin, Karmen
Server and Cluster Martin, Karmen
Visitor Orientation Karmen
Joint Group Meetings Lachlan, Nanditha
Group Seminars David, Megan
Kiwi Lachlan
Display TV Michael
NCI Quota David
GROMOS Software Alpesh
GROMACS Software Alpesh
ATB Alpesh, Martin
New Account Creation Michael
MD Calender Evelyn

Teaching Resource

Biol3004 2009

Biol3004 2008

Biol3004 2007

Sci1000

Student projects 2008

Queensland Protein Group

East Coast Protein Meeting 2011

Bimolecular Modeling School

Calendar

See calendar


Consult the User's Guide for information on using the wiki software.


Joint Group Meetings

Meetings are held every last Friday of the month

Test new page

test page

Retrieved from "http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Main_Page&oldid=16612"