Multiple sequence alignment of 2gnx, 2cmr, lj32 and lf5m
original sequences:
>2GNX:A|PDBID|CHAIN|SEQUENCE ?????????????????????PHLSEQLCFFVQARMEIADFYEKMYALSTQKFINTEELVSTLDTILRKYSSRFHHPILS PLESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFGGQSQKAVQPPHLFLWLMKL KTMLLAKFSFYFHEALSRQTTASEMKALTAKANPDLFGKISSFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPK GVDQYPAVVSLPSDRPVMHWPNVIMIMTDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFIS FLNELSLALKNPKVFASLKPGSKG
>1F5M:B|PDBID|CHAIN|SEQUENCE MGSSTGFHHADHVNYSSNLNKEEILEQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTL ILGPFQGKVACQMIQFGKGVCGTAASTKETQIVPDVNKYPGHIACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDH VDKEFLEKLAKLINKSCVFK
>2CMR:A|PDBID|CHAIN|SEQUENCE MQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAGGSGGHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQ ELLEGSSGGQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAGGSGGHTTWMEWDREINNYTSLIHSLIEESQ NQQEKNEQELLEGSSGGQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAGGHHHHHHG
>1J3W:A|PDBID|CHAIN|SEQUENCE MVEPSLVLYGAPYERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEA RFQEEVHQGERMGLYVDEAGEHALLVLVFDETAPLGKVKLHGKRASEALARIAEEALANPPRLALDTEYREGAEALLDDL LRN
SeqA Name Len(aa) SeqB Name Len(aa) Score
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1 2GNX_A|PDBID|CHAIN|SEQUENCE 323 2 1F5M_B|PDBID|CHAIN|SEQUENCE 180 3 1 2GNX_A|PDBID|CHAIN|SEQUENCE 323 3 2CMR_A|PDBID|CHAIN|SEQUENCE 226 2 1 2GNX_A|PDBID|CHAIN|SEQUENCE 323 4 1J3W_A|PDBID|CHAIN|SEQUENCE 163 4 2 1F5M_B|PDBID|CHAIN|SEQUENCE 180 3 2CMR_A|PDBID|CHAIN|SEQUENCE 226 12 2 1F5M_B|PDBID|CHAIN|SEQUENCE 180 4 1J3W_A|PDBID|CHAIN|SEQUENCE 163 11 3 2CMR_A|PDBID|CHAIN|SEQUENCE 226 4 1J3W_A|PDBID|CHAIN|SEQUENCE 163 3
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CLUSTAL W (1.83) multiple sequence alignment
1F5M_B|PDBID|CHAIN|SEQUENCE -----------------MGSSTGFHHADHVNYSSNLNKEEILEQLLLSYE 33
2CMR_A|PDBID|CHAIN|SEQUENCE -----------------MQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIK 33
1J3W_A|PDBID|CHAIN|SEQUENCE ------------------MVEPSLVLYGAPYERAVEVLEETLRETGARYA 32
2GNX_A|PDBID|CHAIN|SEQUENCE PHLSEQLCFFVQARMEIADFYEKMYALSTQKFINTEELVSTLDTILRKYS 50
: *
1F5M_B|PDBID|CHAIN|SEQUENCE GLSDGQVN-------------WVCNLSNASSLIWHAYKSLAVDIN----- 65 2CMR_A|PDBID|CHAIN|SEQUENCE QLQARILAGGSGGHTTWME--WDREINNYTSLIHSLIEESQNQQE----- 76 1J3W_A|PDBID|CHAIN|SEQUENCE LLID-----------------RKGFVLAHKEALWAPKPPPLDTLA----- 60 2GNX_A|PDBID|CHAIN|SEQUENCE SRFHHPILSPLESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTK 100
: .
1F5M_B|PDBID|CHAIN|SEQUENCE ---WAGFYVTQASEENTLILGPFQG--------KVACQMIQFGKG----- 99 2CMR_A|PDBID|CHAIN|SEQUENCE ---KNEQELLEGSSGGQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQL 123 1J3W_A|PDBID|CHAIN|SEQUENCE ---TLVAGNAAATQALAKLLGEARFQ-------EEVHQGERMGLY----- 95 2GNX_A|PDBID|CHAIN|SEQUENCE LQSWGQTFEKQRETKKHLFGGQSQKAVQPPHLFLWLMKLKTMLLAKFSFY 150
: * : : :
1F5M_B|PDBID|CHAIN|SEQUENCE -----VCGTAASTKETQIVPDVNKYPGHIA-----------------CDG 127 2CMR_A|PDBID|CHAIN|SEQUENCE QARILAGGSGGHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLEG 173 1J3W_A|PDBID|CHAIN|SEQUENCE ------VDEAGEHALLVLVFDETAPLGKVK-----------------LHG 122 2GNX_A|PDBID|CHAIN|SEQUENCE FHEALSRQTTASEMKALTAKANPDLFGKISSFIRKYDAAN----VSLIFD 196
. . : .
1F5M_B|PDBID|CHAIN|SEQUENCE ETKSE---------------------------------------IVVPII 138 2CMR_A|PDBID|CHAIN|SEQUENCE SSGGQ---------------------------------------LLSGIV 184 1J3W_A|PDBID|CHAIN|SEQUENCE KRASE---------------------------------------ALARIA 133 2GNX_A|PDBID|CHAIN|SEQUENCE NRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVMHWPNVIMIM 246
. .: : *
1F5M_B|PDBID|CHAIN|SEQUENCE SNDGKTLGVIDIDCLDYEG---------------------------FDHV 161 2CMR_A|PDBID|CHAIN|SEQUENCE QQQNNLLRAIEAQQHLLQL---------------------------TVWG 207 1J3W_A|PDBID|CHAIN|SEQUENCE EEALANPPRLALDTEYREG---------------------------AEAL 156 2GNX_A|PDBID|CHAIN|SEQUENCE TDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSH 296
: : :
1F5M_B|PDBID|CHAIN|SEQUENCE DKEFLEKLAKLINKSCVFK-------- 180 2CMR_A|PDBID|CHAIN|SEQUENCE IKQLQARILAGGHHHHHHG-------- 226 1J3W_A|PDBID|CHAIN|SEQUENCE LDDLLRN-------------------- 163 2GNX_A|PDBID|CHAIN|SEQUENCE FISFLNELSLALKNPKVFASLKPGSKG 323
.: .
