References - 2qgnA

• Altschul, S. F., W. Gish, et al. (1990). "Basic local alignment search tool." J Mol Biol 215(3): 403-10.

• DeLano, W.L. The PyMOL Molecular Graphics System (2002) DeLano Scientific, San Carlos, CA, USA.

• Genome Net Database Resources. (2008). “Motif search.” http://motif.genome.jp/

• Golovko, A., G. Hjalm, et al. (2000). "Cloning of a human tRNA isopentenyl transferase." Gene 258(1-2): 85-93.

• Holm, L. and C. Sander (1997). "Dali/FSSP classification of three-dimensional protein folds." Nucleic Acids Res 25(1): 231-4.

• Hopper, A. K. and E. M. Phizicky (2003). "tRNA transfers to the limelight." Genes Dev 17(2): 162-80.

• Kohli, D. K. and A. K. Bachhawat (2003). "CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics." Nucleic Acids Res 31(13): 3501-2.

• Laskowski, R. A., N. M. Luscombe, et al. (1996). "Protein clefts in molecular recognition and function." Protein Sci 5(12): 2438-52.

• Laskowski, R. A., J. D. Watson, et al. (2005). "ProFunc: a server for predicting protein function from 3D structure." Nucleic Acids Res 33(Web Server issue): W89-93.

• Liang, J., H. Edelsbrunner, et al. (1998). "Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design." Protein Sci 7(9): 1884-97.

• Martin N.A. and Hopper A.K. (1994). How single genes provide tRNA processing enzymes to mitochondria,nuclei and the cytosol. Biochimie 76 : 1161-1167

• Martinsen, E. S., S. L. Perkins, et al. (2008). "A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): evolution of life-history traits and host switches." Mol Phylogenet Evol 47(1): 261-73.

• NCBI. (2008). "National Center for Biotechnology Information." from http://www.ncbi.nlm.nih.gov/.

• Nesbo, C. L., Y. Boucher, et al. (2001). "Defining the core of nontransferable prokaryotic genes: the euryarchaeal core." J Mol Evol 53(4-5): 340-50.

• Orengo, C. A., A. D. Michie, et al. (1997). "CATH--a hierarchic classification of protein domain structures." Structure 5(8): 1093-108.

• Panther classification system. (2008). “Function of protein.” http://www.pantherdb.org/list/list.do?save=yes&searchModType=unfilterSpecies&filterLevel=1&listType=1&cutoff=1.0

• Perez-Tris, J., D. Hasselquist, et al. (2005). "What are malaria parasites?" Trends Parasitol 21(5): 209-11.

• PROSITE (2008). “Database of protein domains, families and functional sites.” from http://ca.expasy.org/prosite/

• Rambaut, A. (2006). "Institute of Evolutionary Biology, University of Edinburgh: FigTree Version 1.0." from http://tree.bio.ed.ac.uk/software/figtree/.

• Saraste, M., P. R. Sibbald, et al. (1990). "The P-loop--a common motif in ATP- and GTP-binding proteins." Trends Biochem Sci 15(11): 430-4.

• Saccharomyces Genome Database.(2008). “Information about the gene encoding the protein, tRNA isopentenyltransferase 1.” http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000005800

• Shi, J., T. L. Blundell, et al. (2001). "FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties." J Mol Biol 310(1): 243-57.

• Voyich, J. M., D. E. Sturdevant, et al. (2008). "Analysis of Staphylococcus aureus gene expression during PMN phagocytosis." Methods Mol Biol 431: 109-22.

• Xie et al., (2007). Structure of tRNA dimethylallyltransferase: RNA modification through a channel. J. Mol. Biol. 367, 872–881

• Zharkikh, A. and W. H. Li (1992). "Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock." Mol Biol Evol 9(6): 1119-47.