References - 2qgnA: Difference between revisions
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Kohli, D. K. and A. K. Bachhawat (2003). "CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics." Nucleic Acids Res 31(13): 3501-2. | Beiko, R. G., T. J. Harlow, et al. (2005). "Highways of gene sharing in prokaryotes." Proc Natl Acad Sci U S A 102(40): 14332-7. | ||
Kohli, D. K. and A. K. Bachhawat (2003). "CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics." Nucleic Acids Res 31(13): 3501-2. | |||
NCBI. (2008). "National Center for Biotechnology Information." from http://www.ncbi.nlm.nih.gov/. | NCBI. (2008). "National Center for Biotechnology Information." from http://www.ncbi.nlm.nih.gov/. | ||
Rambaut, A. (2006). "Institute of Evolutionary Biology, University of Edinburgh: FigTree Version 1.0." from http://tree.bio.ed.ac.uk/software/figtree/ | Rambaut, A. (2006). "Institute of Evolutionary Biology, University of Edinburgh: FigTree Version 1.0." from http://tree.bio.ed.ac.uk/software/figtree/ | ||
Holm L and Sander C. Dali/FSSP classification of three-dimensional protein folds | Holm L and Sander C. Dali/FSSP classification of three-dimensional protein folds | ||
Nucleic Acids Research. 25, 231-234 (1997) | Nucleic Acids Research. 25, 231-234 (1997) | ||
Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB and Thornton JM. | Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB and Thornton JM. | ||
CATH - a hierarchic classification of protein domain structures. Structure. 5, 1093-1109 (1997) | CATH - a hierarchic classification of protein domain structures. Structure. 5, 1093-1109 (1997) | ||
Laskowski RA, Watson JD and Thornton JM. ProFunc: a server for predicting protein function from 3D structure. | Laskowski RA, Watson JD and Thornton JM. ProFunc: a server for predicting protein function from 3D structure. | ||
Nucleic Acids Research. 33, W89-W93 (2005) | Nucleic Acids Research. 33, W89-W93 (2005) | ||
Function of protein | Function of protein | ||
http://www.pantherdb.org/list/list.do?save=yes&searchModType=unfilterSpecies&filterLevel=1&listType=1&cutoff=1.0 | http://www.pantherdb.org/list/list.do?save=yes&searchModType=unfilterSpecies&filterLevel=1&listType=1&cutoff=1.0 | ||
Information about the gene encoding the protein, tRNA isopentenyltransferase 1 | Information about the gene encoding the protein, tRNA isopentenyltransferase 1 | ||
http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000005800 | http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000005800 | ||
Sequence motifs of protein found using MotifFinder and Prosite. | Sequence motifs of protein found using MotifFinder and Prosite. | ||
Retrieved from http://motif.genome.jp/motif-bin/Srch_Motif_Lib and http://ca.expasy.org/cgi-bin/prosite/ScanView.cgi?scanfile=79404153580.scan.gz | Retrieved from http://motif.genome.jp/motif-bin/Srch_Motif_Lib and http://ca.expasy.org/cgi-bin/prosite/ScanView.cgi?scanfile=79404153580.scan.gz | ||
Function of tRNA-IPT | Function of tRNA-IPT | ||
Retrieved from http://www.genesdev.org/cgi/reprint/17/2/162.pdf | Retrieved from http://www.genesdev.org/cgi/reprint/17/2/162.pdf | ||
'''Literature references''' | '''Literature references''' | ||
Laskowski,R.A. , Luscombe,N.M. , Swindells,M.B. AND Thornton,M.J.(1994) Protein clefts in molecular recognition and function ''Protein Science'', 5:2438-2452. | Laskowski,R.A. , Luscombe,N.M. , Swindells,M.B. AND Thornton,M.J.(1994) Protein clefts in molecular recognition and function ''Protein Science'', 5:2438-2452. | ||
Martin N.A. and Hopper A.K. (1994). How single genes provide tRNA processing enzymes to mitochondria, | Martin N.A. and Hopper A.K. (1994). How single genes provide tRNA processing enzymes to mitochondria, | ||
nuclei and the cytosol. ''Biochimie'' 76 : 1161-1167 | nuclei and the cytosol. ''Biochimie'' 76 : 1161-1167 | ||
Golovko.A. , Hjalm.G , Sitbon.F. and Nicander.B.,.(2000). Cloning of a human tRNA isopentenyl transferase. ''Gene'' 258 (2000) 85–93. | Golovko.A. , Hjalm.G , Sitbon.F. and Nicander.B.,.(2000). Cloning of a human tRNA isopentenyl transferase. ''Gene'' 258 (2000) 85–93. | ||
The P-loop — a common motif in ATP- and GTP-binding proteins. | The P-loop — a common motif in ATP- and GTP-binding proteins. | ||
Retrieved from http://www.sciencedirect.com.ezproxy.library.uq.edu.au/science?_ob=MImg&_imagekey=B6TCV-4864C9B-3K1&_cdi=5180&_user=331728&_orig=browse&_coverDate=11%2F30%2F1990&_sk=999849988&view=c&wchp=dGLbVtz-zSkzV&md5=aa860b3e9ffdbc0359bbf2d3be369038&ie=/sdarticle.pdf | Retrieved from http://www.sciencedirect.com.ezproxy.library.uq.edu.au/science?_ob=MImg&_imagekey=B6TCV-4864C9B-3K1&_cdi=5180&_user=331728&_orig=browse&_coverDate=11%2F30%2F1990&_sk=999849988&view=c&wchp=dGLbVtz-zSkzV&md5=aa860b3e9ffdbc0359bbf2d3be369038&ie=/sdarticle.pdf | ||
Revision as of 00:38, 9 June 2008
Beiko, R. G., T. J. Harlow, et al. (2005). "Highways of gene sharing in prokaryotes." Proc Natl Acad Sci U S A 102(40): 14332-7. Kohli, D. K. and A. K. Bachhawat (2003). "CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics." Nucleic Acids Res 31(13): 3501-2.
NCBI. (2008). "National Center for Biotechnology Information." from http://www.ncbi.nlm.nih.gov/.
Rambaut, A. (2006). "Institute of Evolutionary Biology, University of Edinburgh: FigTree Version 1.0." from http://tree.bio.ed.ac.uk/software/figtree/
Holm L and Sander C. Dali/FSSP classification of three-dimensional protein folds
Nucleic Acids Research. 25, 231-234 (1997)
Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB and Thornton JM.
CATH - a hierarchic classification of protein domain structures. Structure. 5, 1093-1109 (1997)
Laskowski RA, Watson JD and Thornton JM. ProFunc: a server for predicting protein function from 3D structure.
Nucleic Acids Research. 33, W89-W93 (2005)
Function of protein
Information about the gene encoding the protein, tRNA isopentenyltransferase 1
http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=S000005800
Sequence motifs of protein found using MotifFinder and Prosite.
Retrieved from http://motif.genome.jp/motif-bin/Srch_Motif_Lib and http://ca.expasy.org/cgi-bin/prosite/ScanView.cgi?scanfile=79404153580.scan.gz
Function of tRNA-IPT
Retrieved from http://www.genesdev.org/cgi/reprint/17/2/162.pdf
Literature references
Laskowski,R.A. , Luscombe,N.M. , Swindells,M.B. AND Thornton,M.J.(1994) Protein clefts in molecular recognition and function Protein Science, 5:2438-2452.
Martin N.A. and Hopper A.K. (1994). How single genes provide tRNA processing enzymes to mitochondria,
nuclei and the cytosol. Biochimie 76 : 1161-1167
Golovko.A. , Hjalm.G , Sitbon.F. and Nicander.B.,.(2000). Cloning of a human tRNA isopentenyl transferase. Gene 258 (2000) 85–93.
The P-loop — a common motif in ATP- and GTP-binding proteins.
