Structure.

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Structure of Ssu72 RNA polymerase II CTD phosphatase homolog

PDB ID: 3fdf
Structure determined using XRD. The following images were obtained using RasMol.

3fdf.jpeg


3fdf 2.jpeg


3fdfms.jpeg




   Protein Structure Database Searching by DaliLite v. 3

The Dali server is a network service for comparing protein structures in 3D. You submit the coordinates of a query protein structure and Dali compares them against those in the Protein Data Bank (PDB).

These are the chains of different molecules that best matched to the Ssu72 RNA polymerase II CTD phosphatase homolog (it is important to notice that the first match corresponds to the protein that is being researched).

PDB ID ... Z rmsd lali nres %id PDB Description

3fdf-A..... 37.3 0.0 191 191 100 PDB MOLECULE: FR253;

3fmv-H... 32.4 0.6 190 190 100 PDB MOLECULE: SERINE PHOSPHATASE OF RNA POLYMERASE II CTD;

1dg9-A... 11.4 2.3 120 157 13 PDB MOLECULE: TYROSINE PHOSPHATASE;

1rxi-A...... 9.9 2.4 109 131 15 PDB MOLECULE: ARSENATE REDUCTASE;


  DaliLite results: Multiple Structure Alignment

Multipleestructuralalignmenta.jpeg


Multiplestructuralalgnmentb.jpeg


  DalaLite results: Superimposed structures

FR253-TYROSINE PHOSPHATASE

3fdf 1dg9.jpeg


FR253-ARSENATE REDUCTASE

3fdf 1rxi.jpeg


FR253-SERINE PHOSPHATASE OF RNA POLYMERASE II CTD

3fdf 3fmv.jpeg



3fdf vs 1dg9


Drosophila

3fdf.jpg

Tyrosine Phosphatase

1dg9.jpg


Secondary Structures

FR253

3fdfss.jpeg

SERINE PHOSPHATASE OF RNA POLYMERASE II CTD

3fmvss.jpeg

TYROSINE PHOSPHATASE

1dg9ss.jpeg


ARSENATE REDUCTASE

1rxiss.jpeg



  STRING - Known and Predicted Protein-Protein Interactions

Confidence.png

Confidence.jpeg



 Homo sapiens homolog

Structure obtained through Swiss-Model Automatic Modelling Mode

Humanhomolog.jpeg

Superimposition, using Dali server, between Homo sapiens homolog and 3fdf-A

Human-3fdf.jpeg


Structure Alignment

Super1.jpeg

Super2.jpeg